Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKGVSRHVFV---RIVQAIIMKHLVYCFK--LDNDEFNLKNKYKKYK--------PCVTRVYDDLNT-IYRYI-SNNKIIN----
3B4Q Chain:A ((4-93))
LNSAPTPRDVVANAPAPVQAAVAGAQEYAAQAGLNTEELAVDALYNAIKVRLAGGIPPQIEAFYQANRTNFNGFYMANRGAIDFIFS
General information:
TITO was launched using:
RESULT:
Template:
3B4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25181 for 451 contacts (-55.8/contact) +
2D Compatibility (PS) -6579 + (NN) -1925 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -35635.0 ( -79.01 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_3B4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3B4Q-query.scw
PDB file :
Tito_Scwrl_3B4Q.pdb
: