Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLLNIFLKK
3GEU Chain:C ((5-189))
-KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLLNIFLKK
General information:
TITO was launched using:
RESULT:
Template:
3GEU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110382 for 1324 contacts (-83.4/contact) +
2D Compatibility (PS) -19753 + (NN) -6053 + (LL) 208
1D Compatibility (HY) -30000 + (ID) 9250
Total energy: -175230.0 ( -132.35 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_3GEU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GEU-query.scw
PDB file :
Tito_Scwrl_3GEU.pdb
: