Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEIGILENLQKSLALKEGMLSYEMLGK---------SLSYN--PYLPRIIPQTKDCVFATPDEVLETLLKENTRTDCVIVNFKGLYEI----G-----APSVFDLEILGLLRRHASSLIVHQDPFISHYQLLESLVQGSDGVILDEELL-KEDLKGMVEFAWRLGLSVFVETHKPDY-THLKDLG--VLGVLENSPHSYNQKKIVFLD
3QJA Chain:A ((8-195))
---DSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVMAALREPGIGVIAEVK-------------------DPAKLAQA--YQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFAR
General information:
TITO was launched using:
RESULT:
Template:
3QJA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60327 for 1028 contacts (-58.7/contact) +
2D Compatibility (PS) -15883 + (NN) -8311 + (LL) 2032
1D Compatibility (HY) -2000 + (ID) 1550
Total energy: -86039.0 ( -83.70 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_3QJA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QJA-query.scw
PDB file :
Tito_Scwrl_3QJA.pdb
: