Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDYALFNQHLANSREKAKALVLKKQVL--VNKMVVSKPSFIVKEGDQIELIAPNL-FVSRAGEKLGAFLEDHFIDFKEKVVLDVGASKGGFSQVALLKGAKKVLCVDVGKMQLDESLKNDQRIECYEECDIRGFKTPEKID-------LALCDVSFISLYCILEA---ILPLSGEFLTLFKPQFEVGRTIKRNKKGVVMDKEAILNALENFKNHLKTKDFQILTIQESLVKGKNGNVEFFIHFKRA
3HP7 Chain:A ((8-250))
-RVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGEKLRYVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYN---FRYAEPVDFTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVALVKPQFEAGRE-QIG-NGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHLEKT
General information:
TITO was launched using:
RESULT:
Template:
3HP7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119471 for 1886 contacts (-63.3/contact) +
2D Compatibility (PS) -23723 + (NN) -3772 + (LL) 608
1D Compatibility (HY) -16000 + (ID) 4150
Total energy: -166508.0 ( -88.29 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_3HP7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HP7-query.scw
PDB file :
Tito_Scwrl_3HP7.pdb
: