Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHPIMFAYIANALAQARKINGTLCMAFQKISQVKELGIDKAKSLIGNLSQVIIYPTKDTDELIECGVPLSDSEINFLHNTDMRARQVLVKNIVTNASAFIEIDLKKICKNYFIFLIAMLVIEKSSMILKKQTKKLIRKSI
3GB8 Chain:A ((286-383))
----LFTLTMMQLKQMLPLNTNIRLAYSN-------GKDDEQNFIQNLSLFLCTFLKEHDQLIEKRLNLRETLMEALH------YMLLVSEVE-------ETEIFKICLEYWNHLAAELYRESPFSVPPRRQLYLPMLFK
General information:
TITO was launched using:
RESULT:
Template:
3GB8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45914 for 651 contacts (-70.5/contact) +
2D Compatibility (PS) -10382 + (NN) -3066 + (LL) 2064
1D Compatibility (HY) -7600 + (ID) 1500
Total energy: -66398.0 ( -101.99 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_3GB8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GB8-query.scw
PDB file :
Tito_Scwrl_3GB8.pdb
: