Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------VGSAFSAILSPAVGILISPFPIVGLILILLSN-----KARINSIFYTVGWIVGNIA---IFFIGLFLMSSAVSSSGD--QSTLVKVVLIVLGALLILLGAHDFTKRPKNGEKAAT-PKWFEKMSN---I-KPGGAMIFAFVLSAVNPKNMLLSLTAGVSVGALNLSGGQETTATIIFGIIAC----------CSIYVPTIAFLLAGSKLNNVLDSTRKWLIQNNSVIMAVLFLFIGL-SVISKAF--
4K92 Chain:A ((17-259))
AVDEEDFIKAFDDVPVVQIYSSRDLEESINKIREILSDDKHDWEQRVNALKKIRSLLLAGAAEYDNFFQHLRLLDGAFKLSAKDLRSQVVREACITLGHLSSVLG-NKFDHGAEA-----IMPTIFNLIPNSAKIMATSGVVAVRLIIRHTHIPRLIPVITSNCT----SKSVAVRRRCFEFLDLLLQEWQTHSLERHISVLAETIKKGIHDADSEARIEARKCYWGFHSHFSREAEHLYHTLESSYQKALQS
General information:
TITO was launched using:
RESULT:
Template:
4K92.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189804 for 1652 contacts (-114.9/contact) +
2D Compatibility (PS) -21109 + (NN) -1850 + (LL) 768
1D Compatibility (HY) -7600 + (ID) 1900
Total energy: -221495.0 ( -134.08 by residue)
QMean score : 0.221
(partial model without unconserved sides chains):
PDB file :
Tito_4K92.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K92-query.scw
PDB file :
Tito_Scwrl_4K92.pdb
: