Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LRKSRWLLILLLLIVLVALSACEDSGNGDISGAPAKMEKQHFPPTDTKKGWIELLATDGISSQDNLPCVYEEAESVEKLEVHMKELSTASLTYIYIDGHIVQMEQGG-----DELSFQIQLSKTELRKGIHELAVVQYQENNPETKKVEFLKRANYEVKQIKND |
2JD4 Chain:A ((12-125)) | ---------------------------------------------DTAPGYVAGAHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAHQNQMDYATLQLQEGRLHFMFDLGKG--RTKVSHPALL--SDGKWHTVKTEYIKRKAF-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16773 for 510 contacts (32.9/contact) +
2D Compatibility (PS) -9858 + (NN) 8555 + (LL) 4328
1D Compatibility (HY) -5600 + (ID) 1300
Total energy: 12898.0 ( 25.29 by residue)
QMean score : 0.063
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