Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELVMDSAFFGHVLQDMGALIEKERDYLTGLDSDIGDGDHGINLSIGFREVNKQLDELLAVSPDIATLLKKSGMILLGKVGGASGPLYGSFFMKCGADIPGKTEVNFDELCGMIINGAAAVQHRGKAELGDKTMMDAFLPGVEVL-QNRDANAEPIETFSTFVDAMHAGAQSTIPLIAKKGRALRLGERAIGHLDPGSESSWMLMNIILENLKKAV
4LRZ Chain:B ((13-205))
--------------LTRCGDIFSTESEYLTGLDREIGDADHGLNMNRGFSKVVEKLPAI--ADKDIGFILKNTGMTLLSSVGGASGPLFGTFFIRAAQATQARQSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPVALEAASSIAESAAQSTITMQARKGRASYLGERSIGHQDPGATSVMFMMQML--------
General information:
TITO was launched using:
RESULT:
Template:
4LRZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64444 for 1660 contacts (-38.8/contact) +
2D Compatibility (PS) -19618 + (NN) -3285 + (LL) 2388
1D Compatibility (HY) -14000 + (ID) 4200
Total energy: -103159.0 ( -62.14 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_4LRZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LRZ-query.scw
PDB file :
Tito_Scwrl_4LRZ.pdb
: