Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNVDEQKVRVLNNLVEHYGYQDWWEADNRLADWLSMILIQRTI---EKNAKQALANLGPHLDLESLIGMDMATLEEYIYPAGFYKQKSIYIKALIKWFHGH--GASLDKFQTYSTEDLRKELLGIKGVGEETADAMLLYIFERNVFIADLYARRLFSRLGFGEYKTYEQMREEFMPITENIPHKLCKEWHSVIDVHGKHFGKDKAMDESWLLEFSN
4UNF Chain:A ((36-184))
---------VKERLHEEYGDQDPTPRRDPMHELISTILSQRTTHADEEAAYQELRTLG---DWDAITLAPTDAVAHAIRRSNYPESKAPRIQETLRRIKAAPGGYDLDFLRDLPVKDALKWLTDLPGVGVKTASLVLLFNYARPVFPVDTHVHRVSTRVGV-------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4UNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84939 for 985 contacts (-86.2/contact) +
2D Compatibility (PS) -16176 + (NN) -11641 + (LL) 4576
1D Compatibility (HY) -3600 + (ID) 2150
Total energy: -113930.0 ( -115.66 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_4UNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UNF-query.scw
PDB file :
Tito_Scwrl_4UNF.pdb
: