Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LTNLTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIGPTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRSQIEWRLQNGELDDEIVTVEVKEQQNPMLDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL |
| 1E94 Chain:E ((7-449)) | ------HSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQ--------------------QEPSAARQAFRKKLREGQLDDKEIEKQKARKL-----------------------------------KIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1E94.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174572 for 3197 contacts (-54.6/contact) +
2D Compatibility (PS) -43775 + (NN) -18001 + (LL) 3276
1D Compatibility (HY) -36800 + (ID) 10250
Total energy: -280122.0 ( -87.62 by residue)
QMean score : 0.529
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