Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKKRTFALALSMIIASGVILGACGSSSDDKKSSDDKSSKDFTVAMVTDTGGVDDRSFNQSAWEGLQKFGKANDMEKGTDGYNYLQSASEADYKTNLNTAVRSDYDLIYGIGYKLKDAIEEVSKQKPKNQFAIVDDTIDDRDNVVSIGFKDNDGSYLVGVVAGLTTKT---NKVGFVGGVKGTVIDRFEAGFTAGVKAVNPNAQIDVQYANDFAKADKGQQIASSMYSSGVDVIFHAAGGTGNGVFAEAKNLKKKDPSRAVWVIGVDRDQWDEGKVTANDGKDYNVTLTSEIKRVDIAVEDLATRAKAGDFPGGTKIEYGLDKDAVGLSEHQDNISKDVLAKVEEYKQKIVDGDIKVPEKP |
2FQW Chain:A ((4-312)) | ---------------------------------------DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAK-----CKYVTASTDAEYVPSLSAFADENMGLVVACGSFLVEAVIETSARFPKQKFLVIDAVVQDRDNVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGGTGNGVIKEARD--RRLNGQDVWVIGVDRDQYMDG---VYDGSK-SVVLTSMVKRADVAAERISKMAYDGSFPGGQSIMFGLEDKAVGIPEENPNLSSAVMEKIRSFEEKIVSKEIVVPVR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FQW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77965 for 2816 contacts (-27.7/contact) +
2D Compatibility (PS) -33820 + (NN) -19629 + (LL) 2156
1D Compatibility (HY) -29600 + (ID) 6900
Total energy: -165758.0 ( -58.86 by residue)
QMean score : 0.558
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