Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MIEIKKMTG--TKEENYALALKQVQAMIHGEPNLIANLSNVSSIINQALS----DINWVGFYLLEK-ETNQLVLGPFQGLPACIRIPLGKGVCGSAASDQKTYIVENVHDFPGHIACDAASNSEIVLPIV-KNNQLLGVLDIDSPLFNRFNEVDQLWLEKIRDAIVQEIN-
1F5M Chain:A ((4-179))
STGFHHADHVNYSSNLNKEEILEQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKVACQMIQFGKGVCGTAASTKETQIVPDVNKYPGHIACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINKSCVF
General information:
TITO was launched using:
RESULT:
Template:
1F5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108952 for 1274 contacts (-85.5/contact) +
2D Compatibility (PS) -17722 + (NN) -6870 + (LL) 0
1D Compatibility (HY) -13200 + (ID) 3600
Total energy: -150344.0 ( -118.01 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_1F5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F5M-query.scw
PDB file :
Tito_Scwrl_1F5M.pdb
: