Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLLEEFIQEKGTVLPGNVLKVDAFLNHQIDPVLMQAMGNEFAKRFQDLGITKIVTIESSGIAPAVFAGLALSVPVVFARKKKSVTLTDNLFTSTVYSYTKKESNDISVSKQFLTADDTILVIDDFLANGQAALGLLEIAEHAGAKVAGIGIVIEKSFQQGRELLNKTGIPVYSLARIASLENEEILFLEEE
1Y0B Chain:A ((7-194))
---LKRKIEEEGVVLSDQVLKVDSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEKSFQPGRDELVKLGYRVESLARIQSLEEGKVSFVQE-
General information:
TITO was launched using:
RESULT:
Template:
1Y0B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162228 for 1529 contacts (-106.1/contact) +
2D Compatibility (PS) -20519 + (NN) -6419 + (LL) 520
1D Compatibility (HY) -22400 + (ID) 6050
Total energy: -217096.0 ( -141.99 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0B-query.scw
PDB file :
Tito_Scwrl_1Y0B.pdb
: