Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKFIMRVAVLLIICLFIGYNTDLFFSKSVEKNTAEDTATKSNFPDNKKTTNENPKQVQDSSS--LARFINKNVSELKKEFGDPVRVDKTAYGYDNYIYSQPGTSYMQVGVAKNIVQTIYALGQDLNVMPYTIGMSTEKVFTDANLQSEISFNYKDSYYKFELSEEDLNARPIVNIGSGVYAQLNFDKFKSKLISVRYLNKLSFVKMRPYELSYQGEIYEEKLSPADWNAIDDASSKQVLEITNVIRDRYGIEEVAWDESVARVAYGHSVDMKKNDYFDHTSPTQGDLSKRLSKGDVKYTKAGENIAYNYVDSAAAVEGWLNSKGHRENLLDGSYTYMGAGTYRKYYTQNFIIK |
4IFA Chain:A ((41-339)) | ------------------------------------------------------KQVNEDSSDTVLNMIGGDSENLLAKWGEPSRIEPSAYGYEWWVYNQDLAQYVQFGVAERKVVTAYVAGEQVKVPPYYINEKYEDVYKKNPLSHEISLKRGKNSYQFELSDTEVMEQPLVPVEDG-WAQLYFDHFTHELVGVRYMDDETLLRQRPYQLVYSG-----PLTPDKMKQIENGNMQQIFDLTNIIRSRHNLPLLAWDQQTADVAIGHSKDMKDNNYFSHDSPTLGTLGDRLQRGKVGFQLAGENIAAQHSDGVAALQGWLNSEGHRKNLLNEQFTGLGVGVYDKFYTQNFIRK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IFA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89388 for 2357 contacts (-37.9/contact) +
2D Compatibility (PS) -31060 + (NN) -11257 + (LL) 4400
1D Compatibility (HY) -24800 + (ID) 6250
Total energy: -158355.0 ( -67.18 by residue)
QMean score : 0.428
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