Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAVYLDKEKPVSERVEDLLSKMTLAEKCGQLNQRMYGWEAFSRDGETFQITEKFKEEVTRFEGIGALYGLFRADPWSKMNKDTGVSRKNAGKVANKIQRYVIENTRLGIPVLLAEEVPHGHQALDSESYPVNLARAASFNPELQKQVASAITEEISEKGVHLALASALDVLRDPRWGRAEECYGEDPYLAAELTAAITEGFQA-----SGKIAVILKHFAAQGEPIGGHNSGPVSIGVRELREIFLDPMRAGIRSGALGVMAAYNEIDGVPCHANKELLTTILREEMG-FSGIVMADGCALDRLLKLN-PDPKKAAKMALEAGVDLSLWDEVF-PFLEESVEKGILDEKIVDDAVSRVLQVKFQLGLFEQPFVEEDIQEPKS-----DWRQLNLQAAREGICLLKNDFETLPLVGEPKKIAVVGPSIDSLYNQLGDYTAPQNESECVTVLEGIKNQLPENWEVLSEKGAEIREELPDGIQRAEV---------------------VAKEADAIVMVLGGSSARNFDMEFLNNGAVSSKGPNMDAGENVDVADITLPQPQLDLFYAMKRTGKPVIVVMIQGRPIAIPEISLAADAILTAWYPGSLGGTAIAEVLFGHYNPSGKLPVSIPRSSGQIPIYYNQKAV-----------EYKEDYFDLTGKPLYPFGYGLSYSTFEYQDLQIKQESIKISELLGGQSVEVKVTLKNISNVAGEEVVQLYIHDMEASITRRKKELKAFKKVRIAANQTTTVTFKLDKSSFEIWSINNKYEVEPGGIEIFVGGSSDTKLTGRVSIIGG |
| 3U48 Chain:B ((3-725)) | ----------MNQFINALMAKMTLDEKIGQLNLPGAG-DITTGQASSSGIAQKIKE--------GKVGGLFNIKSVTKIKE---------------VQRIAVEESRLKIPLLFGMDVIHGYET----AFPIPLGLSCTWDMELIEKSARIAAIEASADGICWTFSPMVDISRDPRWGRVSEGSGEDPYLGAQIAKAMVKGYQGKDFSDNTSIMACVKHFALYGAGEAGRDYNTVDMSRVRMYNEYFPPYKAAVDAGVGSVMTSFNEIDGIPATGNKWLMTDVLRKRIGAFKGFVVTDYTAINEMIDHGMGDLQTVSALALRAGVDMDMVGEGFLTTLKKSLQEGKITQAQIDAACKRILEAKYKLGLFSDPYKYCNEERARTQIFTPEHRKIAREIAAQSFVLLKNDNNVLPL-KKSGTIALVGPLADNRVNMPGTWSVAAKHAESVSLLEGLKKAAGNDARILYAHGSNLDED-KSLIERATMFGKTLKYDPRPKDVVIKEAVDIANQADVIVAALGESAEM--------------------SGEASSRSNIEIPALQRELLQALLKTGKPVVLVLFTGRPLALTWEHENVPAILNVWFAGTEAGDAISDALFGVVNPSGKLSATFPRNVGQVPIYYNHKNTGRPLPEGQWFQKFRSNYLDVPNDPLYPFGYGLSFTKFTYGDLKLSSTNLK-----GNQTLTASIELTNSGDYDGAEVVQLYIRDLVGSTTRPVKELKGFQKVFLKKGETKTITFKITPEDLKFYNYDLKYDWEPGEFVIMVGGNS------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U48.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -289475 for 6259 contacts (-46.2/contact) +
2D Compatibility (PS) -72606 + (NN) -26287 + (LL) 4056
1D Compatibility (HY) -52000 + (ID) 12450
Total energy: -448762.0 ( -71.70 by residue)
QMean score : 0.471
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