Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSKVIALANQKGGVGKTTSSVNLSSSLAFLGKKVLLVDIDPQ-GNASSGVGVNKGEIEHCIYDVLVDDVAIQDVLQKTDLDNLNVIPATIQLAGAEVELVPAISREIRLKKAIDSIRDDYDYVIIDCPPSLGLLTLNALTAADSVLIPVQCEYYALEGLSQLLNTIRIVQKHLNEDLQIEGVLLTMLDARTNLGIQVIEEVKKYFQNKVFNTIIPRNVRLSEAPSHGKPILLYDAKSKGAEVYLELAKEVVAHG
1HYQ Chain:A ((2-233))
-VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGL--PVTLQNVLAGEARIDEAIYV-GPGGVKVVPAGVSLEGLR-----KA-NPEKLEDVLTQIMESTDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERL------GTKVLGVVVNRITTLGI--EMAKNEIEAILEAKVI-GLIPEDPEVRRAAAYGKPVVLRSPNSPAARAIVELANYIA---
General information:
TITO was launched using:
RESULT:
Template:
1HYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178404 for 2086 contacts (-85.5/contact) +
2D Compatibility (PS) -25026 + (NN) -5527 + (LL) 1400
1D Compatibility (HY) -9200 + (ID) 2900
Total energy: -219657.0 ( -105.30 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1HYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYQ-query.scw
PDB file :
Tito_Scwrl_1HYQ.pdb
: