Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKSTQIILLIVALFILVFSGGFYMKEQQRKEELKRNREYEVSLVKVLKNSYENIEEIKITHPVSTEMPGDWNCTVRISFNDKKSIKYSLTHNKDSKKNYSGSLNETEMDFLEDRTGTTHNTVKVIFSNGQEKFE
2K3D Chain:A ((13-67))
-----------------------------------FFNEQKEKVTLYLKHNIPDFNTVTFTNEEF-NPIGI---SIDGYINNDKNLSFTAGKDVKIFSSSEELDKMFQEPRKGYDEILEHHHHHH----------
General information:
TITO was launched using:
RESULT:
Template:
2K3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10239 for 313 contacts (-32.7/contact) +
2D Compatibility (PS) -5846 + (NN) -3820 + (LL) 4040
1D Compatibility (HY) -1600 + (ID) 350
Total energy: -17815.0 ( -56.92 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_2K3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K3D-query.scw
PDB file :
Tito_Scwrl_2K3D.pdb
: