Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVNFLSQYGMQILVKTWEQVYISFFAIALGIAIAVPLGVVLTRFP--------KVAKIIIAIASMLQTIPSLALLALMIPLF----G--IGKVPAIVALFIYSLLPILRNTYIGMNNVNPTLKDCAKGMGMKPIQSIFQVELPLATPIIMAGIRLSTIYVIAWATLASYIGAGGLGDLIFSGLNL-FQPKLILGGTIPVIILSLIIDYLLGLLETALTPRTTRREA
3TUI Chain:A ((3-216))
-----EPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR-------
General information:
TITO was launched using:
RESULT:
Template:
3TUI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185111 for 1541 contacts (-120.1/contact) +
2D Compatibility (PS) -20665 + (NN) -3479 + (LL) 1280
1D Compatibility (HY) -16800 + (ID) 2500
Total energy: -227275.0 ( -147.49 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_3TUI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TUI-query.scw
PDB file :
Tito_Scwrl_3TUI.pdb
: