Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METRNEKFRRLSEARMTKVFSILNILRNQSDKSKYTFSKSDIEELFGALEQKGEEIKEFFTSPITIKTVNLKNS--------FHYSVVDTSNDKEVSFKKLSTARVEKIFSLMN-LIANLSNKSNYNYSDWEVEELFSAYDEEVKKCKVFFEEKRTVFKYS
3HN3 Chain:A ((296-379))
-------------------------------------------------------VSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGKGFDWPLLVKDFNLLRWLGANAFRTSHYPYAE-EVMQMCDRYGIVVIDECPGVGLALPQFFNN
General information:
TITO was launched using:
RESULT:
Template:
3HN3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4799 for 337 contacts (-14.2/contact) +
2D Compatibility (PS) -8186 + (NN) -1897 + (LL) 4372
1D Compatibility (HY) -7200 + (ID) 1150
Total energy: -18860.0 ( -55.96 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_3HN3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HN3-query.scw
PDB file :
Tito_Scwrl_3HN3.pdb
: