Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGDKLKGTVTGIRPYGAFVSLEDGRTGLIHISEIKTGYIDNIYDVLSVGDEVYVQVIDVDEFTQKASLSLRTLEEERHHIQHR---HRF----SNNRLKIGFKPLEENLPSWVEEGLAYLNNK
2K4K Chain:A ((5-122))
FEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAAPEKKESKPRKPKAAQVSEEASTPQGFNTLKDKLEEWIEMSNRKDLIK
General information:
TITO was launched using:
RESULT:
Template:
2K4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52764 for 672 contacts (-78.5/contact) +
2D Compatibility (PS) -11306 + (NN) 1629 + (LL) 0
1D Compatibility (HY) -8400 + (ID) 2100
Total energy: -72941.0 ( -108.54 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2K4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K4K-query.scw
PDB file :
Tito_Scwrl_2K4K.pdb
: