Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNEKGIVFNIQHFSIHDGPGIRTTVFLKGCPLRCPWCANPESQKMVPETMRDAITNESVIVGEEKSVDDIIEEVLKDIDFYEESGGGITLSGGEIFAQFEFAKAILKRAKSLGIHTAIETTAY--TRHEQFVDLIQYVDFIYTDLKHYNSLKHQEKTMVKNASIIKNIHYAFANGKTIVLRIPVIPNFNDSLEDAEEFACLFDRLD-IRQVQLLPFHQFGQNKYRLLNRQYEMEEIAALHPEDLLDYQAIFSKYNIHCYF
3C8F Chain:A ((1-245))
--SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHG--------------GKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVMF
General information:
TITO was launched using:
RESULT:
Template:
3C8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129589 for 1973 contacts (-65.7/contact) +
2D Compatibility (PS) -26059 + (NN) -12633 + (LL) 1632
1D Compatibility (HY) -16800 + (ID) 3300
Total energy: -186749.0 ( -94.65 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_3C8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C8F-query.scw
PDB file :
Tito_Scwrl_3C8F.pdb
: