Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYKTIKSDGIVEEEIKKSRFICHLKRVESEEEGRNYITQIKKAHYKANHSCSAMVIGEKGDIKRSSDDGEPSGTAGIPMLTVLEKQGLTNVVAVVTRYFGGIKLGAGGLIRAYSGSVANTIKEIGVVEVKEQIGIRIQLTYPQYQTFDNFLKEHHLQEFETEFLEA-VTCKIYVDPKEFEHTITNLTEFYQGKALLTEEGSQIVEIPFKAETDK
2CVE Chain:A ((2-190))
--SLTLADKVVYEEEIQKSRFIAKAAPVASEEEALAFLAENR--EPEATHNGHAYKIGL---LYRFSDDGEPSGTAGRPILHAIEAQGLDRVAVLVVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARAL-KAEETYTPEGVRFALLLPKPEREGFLRALLDATRGQVALE-----------------
General information:
TITO was launched using:
RESULT:
Template:
2CVE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103985 for 1462 contacts (-71.1/contact) +
2D Compatibility (PS) -20021 + (NN) -590 + (LL) 1436
1D Compatibility (HY) -11600 + (ID) 3450
Total energy: -138210.0 ( -94.53 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2CVE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CVE-query.scw
PDB file :
Tito_Scwrl_2CVE.pdb
: