Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKKIIAVDLDGTLLHNNNTISDYTADTLRKVQAQGHKVIITTGRPYRMALAHYLRLDLKT-----PMINFNGALTHIPEKKWAFERS--ATIDKKLL--LETLNLSDAIQADFIASEYRKN----FYITMDNRD-KINPQLFGVNEITDKMALDVTKITRNPNALLMQTRHKDKYELAKELRQHFNHELEVDSWGGPLNILEFSPKGVNKAYALKHLLKSLNLSQENLIAFGDEHNDTEMLAFAHTGYAMKNANPTLLPYADQQIQWTNEEDGVAKTLEKLLL |
1NF2 Chain:A ((3-261)) | ---RVFVFDLDGTLLNDNLEISEKDRRNIEKLSRKCY-VVFASGR----MLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVHWQAYIDDVLYSEKDNEEIKSYARHSNVDYRVEPNL---SELVSKMG--TTKL------LLIDTPERLD-ELKEILSERFKDVVKV--FKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKEASD-IVTLTNNDSGVSYVLERIST |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96379 for 2002 contacts (-48.1/contact) +
2D Compatibility (PS) -26319 + (NN) -9373 + (LL) 1004
1D Compatibility (HY) -18800 + (ID) 3800
Total energy: -153667.0 ( -76.76 by residue)
QMean score : 0.430
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