Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDKFEWVKL---IFATIAVV----AILCFTVIGVQTIWTEDVVKDYNRHLTEQVYVDAAVNQNVNLVFYKRGC-PYCEVGKKAVINAAGKNQFPTFYIDVESEDGQDLVKKYQVEKAATIVQIRGGRSKRVTYAVKDRYGHYQPKRQVIKEVFND
5AVQ Chain:A ((93-201))
-----EWIKFCRQLFGGFSILLWIGAILCFLAYGIQAA-TEDEPANDNLYL-------GVVLSTVVIV---TGCFSYYQEAKSSRIMDSFKNMVPQQALVI--RDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQ
General information:
TITO was launched using:
RESULT:
Template:
5AVQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13347 for 471 contacts (-28.3/contact) +
2D Compatibility (PS) -10409 + (NN) -3185 + (LL) 1728
1D Compatibility (HY) -7200 + (ID) 1650
Total energy: -34063.0 ( -72.32 by residue)
QMean score : 0.163
(partial model without unconserved sides chains):
PDB file :
Tito_5AVQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AVQ-query.scw
PDB file :
Tito_Scwrl_5AVQ.pdb
: