Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSFPSAYSLELGTDLSAKEAYDFSRTPVGSPHHLTDAKKFQCGEKCPFKLTLANFNNPDFNKTPYFTPGARNQEHNPDYCQRMIEHYRQREQETTIENHICFSRE------KNQLIIDLDLVKGTLAIVT----QPRQKDEDIPSSETSHTEVTHRHSRSSSTIDNTTFRSHIKQLTAL-----IRYFLEYQSGEKYTFYSKNKQEIQLERYFVNLAASGQRGVNLEDVHIYYDTATVDYHLDEDNPDNS--YFLIRFHHVCSIDNINNR---PTIIINETKAQHRGVGYKIKILKRAAKDSEPLKVFFF---------------GSFIKHP-------NRKFINPNVSPIDILDYLVFS------- |
| 3J6V Chain:E ((89-430)) | ----------FFTKLTADELWKGALAETGAGARKGRGKR----TKRKRRKDLNRGQIIGEGRRGFLWPGLNAPLMKSGAIQTITQ--RSKEEQEKVEADMVQQREEWDRKRKMKVKRERGWSGNSWGGISLGPPDPGPNGETYDDFDTRILEVRNVFNMTA----KEGRKRSVRVLVAVGNGRGAAGFAIGKATERADAFRKAKNRAVHYLHYIER---YEDHTIYHDISLTFKRTHIKMKKQPRGYGLRCHRAITTICRLIGIKDMYAKVSGSVNMLSLTRGLFQGLSRQE--THQQLADKKSLHVVEFREECGPLPIVVASPQGALRKDPEPEDEVPDIKLDWDDVKAVQGMKRSVWSGLKRAAT |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J6V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 37647 for 2010 contacts (18.7/contact) +
2D Compatibility (PS) -30635 + (NN) -8142 + (LL) 1584
1D Compatibility (HY) -2800 + (ID) 2150
Total energy: -4496.0 ( -2.24 by residue)
QMean score : 0.082
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