Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEIKIRSIPEKTWAQLHMISEEYEYPSFNEFMLAQLQRIVENGGLDLYDNKFAETLAVIKEQQAQILDQLLKNEIKLLAYHAKQDIVEEL--------TTDWLRFMDDVDALAAERGAGGR
2IMB Chain:A ((281-336))
-------------------------------------------------------EELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVG--ASLQYMKNVFKEKYLLSEDTS
General information:
TITO was launched using:
RESULT:
Template:
2IMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1705 for 182 contacts (-9.4/contact) +
2D Compatibility (PS) -4742 + (NN) -1690 + (LL) 4672
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -8615.0 ( -47.34 by residue)
QMean score : 0.262
(partial model without unconserved sides chains):
PDB file :
Tito_2IMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IMB-query.scw
PDB file :
Tito_Scwrl_2IMB.pdb
: