Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKLKTFSLILLTGSLLVACGRGEVSSHSATLWEQ-IVYAFAKSIQWLSFNHS--IGLGIILFTLIIRAIMMPLYNMQMKSSQKMQEIQPRLKELQKKYPG---KDPDSRLKLNDEMQSMYKAEGVNPYASVLPLLIQLPVLWALFQALTRVSFLKVGTFLSLELSQPDPYYILPVLAALFTFLSTWLTNKAAVEKNIALTLMTYVMPFIILVTSFNFASGVVLYWTVSNAFQVFQILLLNNPYKIIKVREEAVRVAHEKEQRVKRAKRKASKKRK
3WO6 Chain:A ((1-232))
---------------------GQDPITSESEGIWNHFFVYPMSWLITTVANLLNGSYGLSIIIVTILIRLALLPLTLKQQKSMRAMQVIRPEMEAIQKKYKEKASKDPKVQQEMQKELLGLYQKHGVNPMAGCLPLFIQLPILMAFYFAIMRTEEIRYHTFLWFDLGQPD--YILPFVAGITTYFQFKMTMS----HQMQMKVMLYVMPVMIIIAGLSLPSALSLYWVIGNIFMIIQTY--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3WO6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126242 for 1369 contacts (-92.2/contact) +
2D Compatibility (PS) -21498 + (NN) -6767 + (LL) 6284
1D Compatibility (HY) -27600 + (ID) 3750
Total energy: -179573.0 ( -131.17 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_3WO6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WO6-query.scw
PDB file :
Tito_Scwrl_3WO6.pdb
: