Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITQEMKEIINSQLAMVATVDAKGQPNIGPKRSMRLWDDKTFIYNENTDGQTRINIEDNGKIEIAFVDRERLLGYRFVGTAEIQTEGAYYEAAKKWAEGRMGVPKAVGI-IHVERIFNLQSGANAGKEIT
2HTD Chain:A ((28-139))
-LTEEQVNLFKNNLVYLATVDADGNPQVGPKGSMTVLDPSHLQYLEKTKGEAYENIKRGSKVALVAADVPSHTAVRVLATAEVHEDDDY---AKKVL-AKTEFPNAFVVNLNIEEVFA------------
General information:
TITO was launched using:
RESULT:
Template:
2HTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43545 for 778 contacts (-56.0/contact) +
2D Compatibility (PS) -11952 + (NN) 67 + (LL) 1076
1D Compatibility (HY) -8400 + (ID) 1800
Total energy: -64554.0 ( -82.97 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_2HTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HTD-query.scw
PDB file :
Tito_Scwrl_2HTD.pdb
: