Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQETTKSIFPKGEKNPYGEFFIGQSYLAALAKSPDG--NVSVGNVTFEAGCRNNWHVHLDGYQILLVTEGSGWYQEEGKEAVSLKPGDVIVTDKGVRHWHGAKKDSEFAHIAITA----GKSEFYEAVSDEKYSKLG
2F4P Chain:C ((17-142))
-------IFERGSKGS-SDFFTGNVWVKMLVTDENGVFNTQVYDVVFEPGARTHWHSHPGG-QILIVTRGKGFYQERGKPARILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQVHLGPAEWLGSVTEEEYRKAT
General information:
TITO was launched using:
RESULT:
Template:
2F4P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20479 for 854 contacts (-24.0/contact) +
2D Compatibility (PS) -13004 + (NN) -4269 + (LL) 756
1D Compatibility (HY) -8800 + (ID) 2750
Total energy: -48546.0 ( -56.85 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_2F4P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F4P-query.scw
PDB file :
Tito_Scwrl_2F4P.pdb
: