Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVATFIEPG-KMVITDTPKPVIEQETDAVIKIVRACVCGSDLWWYRGISK-RESGSFAGHEAIGIVEEVGTKVTDVSKGDFVIVPFTHGCGQCPSCKAGFDGNCTNHQAA---------------------K-NVDTKVNIYVILMQTGH-WLRSQDNLLIMIMRLLT-LCSPYQM
3UKO Chain:A ((9-182))
CKAAVAYEPNKPLVIEDVQVAP-PQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGA
General information:
TITO was launched using:
RESULT:
Template:
3UKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83555 for 1105 contacts (-75.6/contact) +
2D Compatibility (PS) -16009 + (NN) -2071 + (LL) 204
1D Compatibility (HY) -4800 + (ID) 2050
Total energy: -108281.0 ( -97.99 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_3UKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UKO-query.scw
PDB file :
Tito_Scwrl_3UKO.pdb
: