Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLLVDNYDSFTYNLKQYLS-VYKEIFVIKNDDPNLFLLA-ESAEAIVLSPGPGHPKDA---GKILELINQFIGQKPILGICLGHQALAECLGGRLNLANHVMHGKQSWVTIND--HTSLFKGIDSPTQVMRYHSLVVTDLPENIAIIARSNEDNEIMAFHCPSLKVYAMQFHPESIGSIDGMKMIENFLTLIND
1QDL Chain:B ((3-195))
LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLNRV--
General information:
TITO was launched using:
RESULT:
Template:
1QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149372 for 1661 contacts (-89.9/contact) +
2D Compatibility (PS) -20380 + (NN) -8497 + (LL) -156
1D Compatibility (HY) -17600 + (ID) 3700
Total energy: -199705.0 ( -120.23 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_1QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QDL-query.scw
PDB file :
Tito_Scwrl_1QDL.pdb
: