Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYSTLAKEQGVQGYLDGKGSLRDICKWYDISSRSVLQKWIKRYTSGEDLKATSRGYSRMKQGRQATFEERVEIVNYTIA-HGKDYQAAIEKF---G-------VSYQQIYSWVRKLEKNGSQGLVDRRVKGLESRPDLTEIEQL
1PDN Chain:C ((17-124))
-PLPNNIRLKIVEMAADG-IRPCVISRQLRV-SHGCVSKILNRYQETGSIRPGVI---GGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLV-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27424 for 559 contacts (-49.1/contact) +
2D Compatibility (PS) -10417 + (NN) -2163 + (LL) 1960
1D Compatibility (HY) -800 + (ID) 1050
Total energy: -39894.0 ( -71.37 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_1PDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PDN-query.scw
PDB file :
Tito_Scwrl_1PDN.pdb
: