Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------------MFFPNIDNIIKNYIKEMITHSDIPDLQKQLETAYQVPYSFALGIYISTIESIILNWIDHDFTEEPEEIARYITSVVRI-
1YOZ Chain:A ((9-124))
GHMLYINSFLDRMGEIIRGEKSVEEADKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLLKTYVVSQLSIHFERLKEFAESKGEKKLD---PEVINEIALYIDRVEKEV
General information:
TITO was launched using:
RESULT:
Template:
1YOZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31963 for 430 contacts (-74.3/contact) +
2D Compatibility (PS) -7349 + (NN) 5829 + (LL) 100
1D Compatibility (HY) -1200 + (ID) 850
Total energy: -35433.0 ( -82.40 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_1YOZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YOZ-query.scw
PDB file :
Tito_Scwrl_1YOZ.pdb
: