Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKIITFTNKVVVITGAGGVLCGYMAKEFAKAGAKVAL-LDLNQEAAQTFADEIVEEGGIAKAYKANVLSKENLEEVHQAVLEDLGPTDILVNGAGGNNPKATTDNEFHELDLPSETKTFFELDEAGISFVFNLNYLGTLLPTQVFAQDMVGREGANIINISSMNAFTPLTKIPAYSGAKAAISNFTQWLAVHFSKVGIRCNAIAPGFLVTNQNRNLLFTEDGQPTARAEKILNNTPMGRFGEASELIGGLFFLADEKSSSFVNGVVLPIDGGFAAYSGV |
4DMM Chain:C ((24-266)) | ----LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAG-----ITRDT------------LLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDM----------------EKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVMA--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4DMM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -148511 for 2083 contacts (-71.3/contact) +
2D Compatibility (PS) -25114 + (NN) -5050 + (LL) 1884
1D Compatibility (HY) -16400 + (ID) 4200
Total energy: -197391.0 ( -94.76 by residue)
QMean score : 0.547
|
|
|