Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFYLVRHGKTQWNLEGRFQGANGDSPLLEEAIEELEELGQYLSSIHFDAVYSSDLGRARDTVNILNDANSCPKEIHYTPQLREWALGTLEGCKIATMQAIYPRQMTAFYQNPLQFKHDMFGAESLYQTTHRVESFLRSLASKNY-DKVLIVGHGANLTASIRSLLGYQYGSLHYKDKLDNASLTIIETHDFKDFNCLTWNDKSYLRQEVKMTH
1EBB Chain:A ((4-201))
--LYLTRHGETKWNVERRMQGWQ-DSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALETAEIVRGGRLIP--IYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQR--GERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGTSVTIIEV-DGGTFHVAVEGDVSHIE-------
General information:
TITO was launched using:
RESULT:
Template:
1EBB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78476 for 1604 contacts (-48.9/contact) +
2D Compatibility (PS) -20946 + (NN) -4235 + (LL) 1112
1D Compatibility (HY) -9600 + (ID) 3050
Total energy: -115195.0 ( -71.82 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1EBB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EBB-query.scw
PDB file :
Tito_Scwrl_1EBB.pdb
: