Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLYPTPIAKLIDSFSKLPGIGTKTATRLAFYTIGMSDEDVNEFAKNLLAAKRELTYCSVCGNLTDDDPCLICTDKTRDQSVILVVEDSKDVSAMEKIQEYNGLYHVLHGLISPMNGISPDDINLKSLITRLMDGQVTEVIVATNATADGEATSMYISRVLKPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL
3VDP Chain:A ((16-212))
-YYSTSVAKLIEELSKLPGIGPKTAQRLAFFIINMPLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV
General information:
TITO was launched using:
RESULT:
Template:
3VDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121396 for 1282 contacts (-94.7/contact) +
2D Compatibility (PS) -21647 + (NN) -13126 + (LL) 208
1D Compatibility (HY) -25200 + (ID) 5300
Total energy: -186461.0 ( -145.45 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_3VDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VDP-query.scw
PDB file :
Tito_Scwrl_3VDP.pdb
: