Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKLLGQAGFGSRNQVKKLIRSRQVSVDGQIVTKDNVIVDSGLQSIFVGKERV-CLKESSYYLLYKPSGVVSAVRDSEHKTVIDLISEKDRVEGLYPIGRLDRDTEGLLIITNNGPLGYRMLHPKHHVAKTYYVEVNGFLERDAITFFEEGVVFDDG-TKCKPAELTIDTANNDKSTARITITEGKFHQVKKMFLAYGVKVIYLRRISFGDLRLDMNLKPGQYRRLRDSEAAILKRYLD
1KSK Chain:A ((4-233))
MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV----
General information:
TITO was launched using:
RESULT:
Template:
1KSK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133074 for 1611 contacts (-82.6/contact) +
2D Compatibility (PS) -24198 + (NN) -4350 + (LL) 396
1D Compatibility (HY) -13600 + (ID) 4050
Total energy: -178876.0 ( -111.03 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_1KSK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KSK-query.scw
PDB file :
Tito_Scwrl_1KSK.pdb
: