Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKSKKIENYQLLLLQAQALFSDETNALANLSNASAMLNAMLPNSVFTGFYLFDGKELILGPFQGGVSCVHITLGKGVCGESAQTAKTLIVDDVTKHANYISCDSKAMSEIVVPMFKNGKLLGVLDLDSSLVADYDEIDQEYLEKFVGILVEHTIWNLDMFGVEK
3RFB Chain:A ((10-167))
---SEKQSRYQMLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGKELVLGPFQGGVSCIRIALGKGVCGEAAHFQETVIVGDVTTYLNYISCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVAILLEKTTWDFTMFEE--
General information:
TITO was launched using:
RESULT:
Template:
3RFB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100788 for 1224 contacts (-82.3/contact) +
2D Compatibility (PS) -17411 + (NN) -8393 + (LL) 212
1D Compatibility (HY) -20400 + (ID) 5100
Total energy: -151880.0 ( -124.08 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3RFB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RFB-query.scw
PDB file :
Tito_Scwrl_3RFB.pdb
: