Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDAKFDFAKLLVYKAGQFIKSEMQNTFDVEEKSRFDDLVTSLDKKTQKLLIQEIIQHYPDDNILAEEDDV-R-SPIAQGNVWVLDPIDGTVNFIVQKDNFAVMLAYYEEGVGQFGIIYDVM-ADILYSGGGHFDVYANDKKIVPFQECPLERCLLGVNSAMYA-E-NDCGIAHLAS-ETLGVRIYGGAGISMAKVMQGKLLAYFSY-IQPWDYAAAKIMGETLGFTLLTLDGEEPNYSTRQKVMFL-PKSKLNLIQSYLTKK
3T0J Chain:A ((9-264))
-MALYGFAQGLIQEAGIRIKQLMEQNLT------PNDLVTNVDKATEDFIFDTILETYPNHQVLGEEGHGHDID-TSKGTVWVVDPIDGTLNFVHQQENFAISIGIYIDGKPYAGFVYDVMADVL-YHAKVGEGAYRGSQPLKPLNDSNLRQSIIGINPNWLTKPILGEIFKE-IVNDSRSARAYGSAALEIVSVATGNLEAYMTPRLQPWDFAGGLVILYEVNGQASNLLGEPLTISG-PNSILVGNRGLHQEISNDYLEP
General information:
TITO was launched using:
RESULT:
Template:
3T0J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172701 for 2066 contacts (-83.6/contact) +
2D Compatibility (PS) -26345 + (NN) -12489 + (LL) 1056
1D Compatibility (HY) -15600 + (ID) 3500
Total energy: -229579.0 ( -111.12 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_3T0J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T0J-query.scw
PDB file :
Tito_Scwrl_3T0J.pdb
: