Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLFLIMMERAGLIILLAYAFVHIPFIKQTLKQPELKKHQYILLILFSLFAIISNFTGVEIQSDLSIIPQTLNHIADQSSVANTRVLTIGVSGLIGGPIVGIIVGLLSVFVRYLQGGLAPHIYVISSLLIGLCSGLSGNYLRKNYNKIRVLDAMVVGFGMEILQMICILIFSVDFNQALRLVSFISMPMILSNTLGLGIFISIISSTQKLEEHAKAFQTHQVLELANLTLPYLRKGLTTESCQPVAEIIHKHMDVSAVSLTSQSAILAYVGDGADHHLPNTQILTKLAKRAIDTGKVSVATDKSEIECDHKNCPLSSAIVIPLHIHDVIVGTLKLYFSDAQHMTYVDRQLAEGLGNIFSTQLALGQAEEATRLLQDAEMKSLQAQVNPHFLFNALNTIYGLIRMDSEK--ARKLVQDFSKVIRANLQRAKQNLI-------PLHDELEQVNAYLALEEARFPNMVAFNLDNQTNSDDNLMIPPFTL--------QVLIENSYKHAFKHVNKNNQLKVTIARNNDRLHIIVQDNGIGIPKEKLITLGKKTQISKQGSGTAIENLVRRLNIIYDGQASLKFESN-DSGTCAIVNIPIKN |
3D36 Chain:A ((23-224)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPETPEKLNVKLEIE--RVIDILR-PLANMSCVDIQATLAPFSVIGEREKFRQCLL-NVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGVKGTGLGMMV-VYRIIESMNGTIRIESEIHKGTTVSIYLPLAS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3D36.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -49107 for 1255 contacts (-39.1/contact) +
2D Compatibility (PS) -19705 + (NN) -8146 + (LL) 32764
1D Compatibility (HY) -10800 + (ID) 2500
Total energy: -57494.0 ( -45.81 by residue)
QMean score : 0.355
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