Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKILITSGGTTEKIDTVRSITNHATGALGKIIAEKYLREGHQVTLVTTKNAIKPESATNLSIFEIEDVDSLIKTLKPLVKEHDILIHSMAVSDYTPVYMADFEKVKSSNDLDTFLRKDNHEGKISSESEYQVLFLKKTPKVISLVKKWNPQIILVGFKLLVNVTKENLFKVARHSLIKNKATFILANDLIDITSKHHIAYLLDHDNVYKATTKEDIAQLIYEKVKKYD
2GK4 Chain:A ((4-231))
MKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQERVQDYQVLIHSMAVSDYTPVYMTGLEEVQASSNLKEFLSKQNHQAKISSTDEVQVLFLKKTPKIISLVKEWNPTIHLIGFKLLVDVTEDHLVDIARKSLIKNQADLIIANDLTQISADQHRAIFVEKNQLQTVQTKEEIAELLLEKIQAYH
General information:
TITO was launched using:
RESULT:
Template:
2GK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132639 for 1790 contacts (-74.1/contact) +
2D Compatibility (PS) -24335 + (NN) -8015 + (LL) 0
1D Compatibility (HY) -27600 + (ID) 6450
Total energy: -199039.0 ( -111.19 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_2GK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GK4-query.scw
PDB file :
Tito_Scwrl_2GK4.pdb
: