Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METAVRVVTAMGAILAIVGLGWVLTGAFDYFAGRKNGSPQMMDQGFTSMISGGALAVIAAGVAAAIVAAMRAISF
3GK6 Chain:A ((84-120))
-----------------------FTGAFDVIACSDTLSPQLLSESVKTKVSSGKYVTFSATGEMPQVVIDLWNEV
General information:
TITO was launched using:
RESULT:
Template:
3GK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1551 for 111 contacts (-14.0/contact) +
2D Compatibility (PS) -3850 + (NN) -944 + (LL) 2660
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -7485.0 ( -67.43 by residue)
QMean score : -0.282
(partial model without unconserved sides chains):
PDB file :
Tito_3GK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GK6-query.scw
PDB file :
Tito_Scwrl_3GK6.pdb
: