Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHLEIEYKTLLNKDEFNRLTSLFSHVQPIT---QTNYYFDTETFEMKAHRMSLRIRTLPNRAELTLKIPREVGNLEHNHDLTLEEAKYIVKNGQFPEDTEIASLILEKGVDPTKLAVFGQLTTTRREMETSIGLMALDSNIYADIKDYELELEVKQPKQGKRDFDQFLKENNINFKYAKSKVARFSATLKNN
2GFG Chain:A ((6-191))
---IEIERKTLVSKETFKRLISQL-HIGEGDFKLQRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPAGLLETNQTLSKQEAKLALESAHFP-SGEVMDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPTENKIQRFFSKKE--
General information:
TITO was launched using:
RESULT:
Template:
2GFG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31010 for 1348 contacts (-23.0/contact) +
2D Compatibility (PS) -18713 + (NN) 3894 + (LL) 220
1D Compatibility (HY) -9200 + (ID) 3050
Total energy: -57859.0 ( -42.92 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_2GFG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GFG-query.scw
PDB file :
Tito_Scwrl_2GFG.pdb
: