Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKHITPVFTGSLIVSLILVLLGIIVPRGFQSWTQILREQVSTNFGWLYLLLVTSILALCVFFIMSPLGQIRLGRPHSRPEYSTVSWIAMMFSAGMGIGLVFYGAAEPSSHFAISTPGAPKESQTALADAFRFTFFHWGIHAWAVYALVALALAYFGFRKQEKYLLSVTLKPLFGDKTDG
4LLH Chain:B ((37-199))
------------ALVIVLATVVWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVFFIVVIAASKFGTIRLGRIDEAPEFRTVSWISMMFAAGMGIDLMFYGTTEPLTFY---RNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGRKQLLSSAFVPLIGEKGAE
General information:
TITO was launched using:
RESULT:
Template:
4LLH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77993 for 893 contacts (-87.3/contact) +
2D Compatibility (PS) -17284 + (NN) -10842 + (LL) 992
1D Compatibility (HY) -19600 + (ID) 3400
Total energy: -128127.0 ( -143.48 by residue)
QMean score : 0.111
(partial model without unconserved sides chains):
PDB file :
Tito_4LLH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LLH-query.scw
PDB file :
Tito_Scwrl_4LLH.pdb
: