Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSETVKLFQYSTLSSLMAGLYKGSLTIGELLTHGDLGIGTVHMIDGELIVLDGKAYQAIGTDGKAEIIQLSDDVTVPYAAVLPHYIQKQFDINAETDNKDLEEMILKNFEGQNLFKSLKIKGTFSRMHVRMIPKSPQ-HKRFADIASNQPEFTRENVSGTLVGIWTPELFHGVGVKGFHVHFISDDLTFGGHVMDYSLTQGKVEIGKVDQLDQCFPTQDQ-EFLEANFDLQKLREDIDLSE
1XV2 Chain:A ((6-237))
----NVLYQHGTLGTLMAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLDGKAYHAN-EHKEF--IELKGDEKVPYASITNFKASKTFPLQQ-LSQDDVFAQIKNEMLSENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPV-NNETFVKAKIDYKDVAEEIREAE
General information:
TITO was launched using:
RESULT:
Template:
1XV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129619 for 1978 contacts (-65.5/contact) +
2D Compatibility (PS) -24718 + (NN) -3670 + (LL) 696
1D Compatibility (HY) -18400 + (ID) 4950
Total energy: -180661.0 ( -91.34 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_1XV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XV2-query.scw
PDB file :
Tito_Scwrl_1XV2.pdb
: