Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIIIGADTAGSKLKDVVKDFLVGENFEVVDVT-QDGQDFVDVTLAVAAEVNKQEENLGIVIDAYGAGPFMVATKIKGMVAAEVSDERSAYMTRGHNNSRMITMGSEIVGEGLAKNIAKGFVNGKYDGGRHQIRVDMLNKMC
4LFM Chain:C ((21-162))
MDVIIGADKDGFAMKEQVKKYLEEHQYRVADVTPEPAEDFVESSLAVTKKLLNSDAHKAIMFDRYGVGSAMASNKVKGMVTAVVEEENTAHMTAEHNGAKAIAIGTGITGYDRALVIIQRYLDTEYAGGRHQIRLDMLEKMI
General information:
TITO was launched using:
RESULT:
Template:
4LFM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76053 for 1205 contacts (-63.1/contact) +
2D Compatibility (PS) -15111 + (NN) -7790 + (LL) 0
1D Compatibility (HY) -11200 + (ID) 2950
Total energy: -113104.0 ( -93.86 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_4LFM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFM-query.scw
PDB file :
Tito_Scwrl_4LFM.pdb
: