Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSRQNSKLIQAFIAIILFFSLGLVIKYWPDT-VIAFDQNIQESVRGQLPNLSTRFFKLITVIGNTVSQIAI---AIMSVTFCYLKKWYPQARFIAVNAIISGICILSLKLIFQRVRPTLTHLV--------FAGGYSFPSGHSMGTFMIFGSIIILLQYYMPKSIWKLLCQGILGLLIFLIGLSRIYLGVHFPTDVLAGFILAYGILNLTAYIFLAKDWLKKVK--------
1D2T Chain:A ((7-230))
-GNDTTTKPDLYYLKNSEAINSLALLPPPPAVGSIAFLNDQAMYEQGRLLRNTERGKLAAEDANLSSGGVANAFSGAFGSPITEKDAPALHKLLTNMIEDAGDLATRSAKDHYMRIRPFAFYGVSTCNTQDKLSKNGSYPSGHTSIGWATALVLAEIN----------PQRQNEILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLHTNPAFQQQLQKAKAEFAQHQK
General information:
TITO was launched using:
RESULT:
Template:
1D2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -238833 for 1738 contacts (-137.4/contact) +
2D Compatibility (PS) -19952 + (NN) 5925 + (LL) 1040
1D Compatibility (HY) 12800 + (ID) 1600
Total energy: -240620.0 ( -138.45 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_1D2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D2T-query.scw
PDB file :
Tito_Scwrl_1D2T.pdb
: