Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDFEEKTINRQTVFDGQIIKVAVDDVELPNGLGQSKRELVFHGGAVATLAVTPEHKIVLVKQYRKAIEGISYEIPAGKLE-TGESGSKEEAALRELEEETGYTG-NLEILYSFYTAIGFCNEKIVLYLATDLQKVENPRPQDDDEVLELLELSYEDCMQMVEKGMIQDAKTIIALQYYGLKMGGHS
1MK1 Chain:A ((6-183))
----FETISSETLHTGAIFALRRDQVR------IVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEP--PHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGR----------TMGWYPIAEAARRVLRGEIVNSIAIAGVLAVHAVTTGFA
General information:
TITO was launched using:
RESULT:
Template:
1MK1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72505 for 1166 contacts (-62.2/contact) +
2D Compatibility (PS) -17487 + (NN) -1411 + (LL) 140
1D Compatibility (HY) -8800 + (ID) 2600
Total energy: -102663.0 ( -88.05 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_1MK1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MK1-query.scw
PDB file :
Tito_Scwrl_1MK1.pdb
: