Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKKDLFDAFDDFSQNLLVGLSEIETMKKQIQKLLEENTVLRIENGKLRERLSVIEAETETAVKNSKQGRELLEGIYNDGFHICNTFYGQRRENDEECAFCIELLYRD
2VYC Chain:A ((289-357))
------------------------EMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKT-SDRLHFDEAWYGYARFNPIYADHYAMRGEPG
General information:
TITO was launched using:
RESULT:
Template:
2VYC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4234 for 375 contacts (11.3/contact) +
2D Compatibility (PS) -7414 + (NN) -1175 + (LL) 1604
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -5201.0 ( -13.87 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_2VYC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VYC-query.scw
PDB file :
Tito_Scwrl_2VYC.pdb
: