Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTIITSKSNNLIKKTKKLLQKKYRK--SSYLIEGWHLFEEAEKYGAQFLNIFVTETAIDR--------LRKPEEAIVVTDDVLKELTDSQTPQGIVAEIAFQETRWTDIKK---GRFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVEIEQFVNFCKAEGITMIATTLSEQSVNYKNLPKYDHFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIFSLI
1IPA Chain:A ((2-258))
---RITSTANPRIKELARLLERKHRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAAL---LALLEVSEAVLKKLSVRDNPAGLIALARMPERTLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVA-GGVDLYSPQVIRNSTGVVFSLRTLAASESEVLDWIKQHNLPLVATTPHAEA-LYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEAL
General information:
TITO was launched using:
RESULT:
Template:
1IPA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153494 for 1921 contacts (-79.9/contact) +
2D Compatibility (PS) -25539 + (NN) -7556 + (LL) 648
1D Compatibility (HY) -15600 + (ID) 3600
Total energy: -205141.0 ( -106.79 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_1IPA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IPA-query.scw
PDB file :
Tito_Scwrl_1IPA.pdb
: